Variant report

Variant	rs10993153
Chromosome Location	chr9:97064439-97064440
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97057093..97059981-chr9:97063795..97065484,2	K562	blood:
2	chr9:97052305..97055569-chr9:97062185..97065091,3	K562	blood:
3	chr9:97062115..97063983-chr9:97064405..97066537,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10821336	0.86[CEU][hapmap]
rs10821343	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10821344	1.00[AFR][1000 genomes]
rs10821349	1.00[AFR][1000 genomes]
rs10821350	1.00[AFR][1000 genomes]
rs10993141	0.86[CEU][hapmap]
rs10993142	0.86[CEU][hapmap]
rs10993146	0.86[CEU][hapmap]
rs10993195	1.00[AFR][1000 genomes]
rs10993200	1.00[AFR][1000 genomes]
rs10993202	1.00[AFR][1000 genomes]
rs10993208	1.00[AFR][1000 genomes]
rs10993209	1.00[AFR][1000 genomes]
rs12335794	1.00[AFR][1000 genomes]
rs12335976	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12343413	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12344077	1.00[AFR][1000 genomes]
rs12350212	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12352497	1.00[AFR][1000 genomes]
rs17351644	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs34117319	1.00[AFR][1000 genomes]
rs4557766	0.86[CEU][hapmap]
rs7029667	0.86[CEU][hapmap]
rs7467208	1.00[AFR][1000 genomes]
rs7849604	0.86[CEU][hapmap]
rs7863750	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7865288	0.86[CEU][hapmap]
rs7865561	0.86[CEU][hapmap]
rs7867289	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs7874524	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97032400-97064600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:97039400-97067600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr9:97040000-97064600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:97041200-97065400	Weak transcription	Small Intestine	intestine
5	chr9:97042600-97068400	Weak transcription	Fetal Brain Female	brain
6	chr9:97043800-97066400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:97050800-97064600	Weak transcription	Right Ventricle	heart
8	chr9:97055600-97066600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:97055600-97067800	Weak transcription	HepG2	liver
10	chr9:97055600-97068000	Weak transcription	Pancreas	Pancrea
11	chr9:97056000-97064600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:97056400-97064600	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:97056800-97064800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:97058400-97064600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:97058800-97065000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:97061600-97064600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:97061800-97064600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr9:97062200-97064800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:97062800-97066200	Weak transcription	Fetal Brain Male	brain
20	chr9:97063000-97064600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:97063000-97064600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:97063000-97064600	Weak transcription	Brain Anterior Caudate	brain
23	chr9:97063000-97064600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:97063000-97064600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr9:97063000-97064600	Weak transcription	Thymus	Thymus
26	chr9:97063000-97064600	Weak transcription	GM12878-XiMat	blood
27	chr9:97063000-97064600	Weak transcription	HSMMtube	muscle
28	chr9:97063000-97065200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:97063200-97064600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr9:97063200-97064600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:97063200-97064800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr9:97063200-97064800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:97063200-97065000	Weak transcription	Fetal Stomach	stomach
34	chr9:97063200-97066000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:97063400-97064600	Weak transcription	Stomach Mucosa	stomach
36	chr9:97063400-97065000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr9:97063400-97065000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:97063400-97065000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:97063400-97065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:97063400-97065000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:97063400-97065000	Weak transcription	Left Ventricle	heart
42	chr9:97063400-97065000	Weak transcription	Ovary	ovary
43	chr9:97063400-97065000	Weak transcription	A549	lung
44	chr9:97063400-97065200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr9:97063400-97065200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:97063600-97065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:97063600-97065200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:97063600-97065200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:97063600-97065200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:97063600-97065200	Weak transcription	Aorta	Aorta

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