Variant report

Variant	rs7867289
Chromosome Location	chr9:97222047-97222048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:25599854..25601775-chr9:97221816..97224638,2	MCF-7	breast:
2	chr9:97220678..97222830-chr9:97224349..97226700,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1064560	1.00[YRI][hapmap]
rs10821336	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10821343	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10821349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10821350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821351	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993141	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];1.00[YRI][hapmap]
rs10993142	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993146	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10993153	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs10993185	1.00[AMR][1000 genomes]
rs10993195	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10993200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993212	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12335794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12335976	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12342163	0.88[GIH][hapmap]
rs12343413	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs12344077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12349965	0.93[EUR][1000 genomes]
rs12350212	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12352497	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13292835	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17351644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34117319	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs600130	1.00[YRI][hapmap]
rs7026123	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7029667	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7048293	1.00[AMR][1000 genomes]
rs71263779	1.00[AMR][1000 genomes]
rs7467208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7849604	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[YRI][hapmap]
rs7863750	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7865288	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap]
rs7865561	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap]
rs7867183	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs7874524	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9886806	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv893593	chr9:97196979-97228918	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97201000-97223400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:97201000-97224600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr9:97201000-97225000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr9:97201000-97225800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:97201400-97225200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:97201600-97224800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:97202000-97224200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:97202200-97225600	Strong transcription	Dnd41	blood
9	chr9:97202400-97222600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:97203200-97225000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:97204200-97222800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:97204400-97227000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:97206200-97225800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:97206600-97224400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:97206800-97225200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr9:97206800-97225600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:97207000-97225800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr9:97207200-97224800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:97208200-97224800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:97208400-97222800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:97208400-97224600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:97208400-97225200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:97209000-97225000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:97209000-97225400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:97209200-97224200	Strong transcription	Liver	Liver
26	chr9:97209200-97225200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr9:97209200-97225600	Strong transcription	Fetal Muscle Trunk	muscle
28	chr9:97209400-97222400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:97209600-97223600	Strong transcription	Fetal Thymus	thymus
30	chr9:97209600-97224400	Strong transcription	Osteobl	bone
31	chr9:97209600-97224800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:97209800-97225200	Strong transcription	Placenta	Placenta
33	chr9:97209800-97225600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:97210000-97225200	Strong transcription	Fetal Muscle Leg	muscle
35	chr9:97211600-97224400	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:97212400-97222200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:97212400-97224800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:97212600-97225400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:97212600-97225400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:97213000-97222200	Strong transcription	Fetal Intestine Small	intestine
41	chr9:97213000-97222400	Strong transcription	Fetal Stomach	stomach
42	chr9:97213800-97224000	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr9:97213800-97224800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr9:97214000-97224400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:97215200-97223800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:97215200-97225400	Strong transcription	Primary B cells from cord blood	blood
47	chr9:97215200-97225400	Strong transcription	Primary T cells from cord blood	blood
48	chr9:97215200-97225800	Strong transcription	HSMM	muscle
49	chr9:97215400-97225200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:97215400-97225400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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