Variant report

Variant	rs7020396
Chromosome Location	chr9:104221231-104221232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:104220969..104222009-chr9:104292098..104293000,3	K562	blood:
2	chr9:104220056..104222734-chr9:104292272..104293989,2	K562	blood:
3	chr9:104221066..104221882-chr9:107505389..107506114,2	K562	blood:
4	chr9:104211110..104212494-chr9:104220920..104222010,4	MCF-7	breast:
5	chr9:104221002..104221801-chr9:104329610..104330484,3	MCF-7	breast:
6	chr9:104221051..104221944-chr9:104292075..104293445,6	MCF-7	breast:
7	chr9:104221027..104221969-chr9:104291863..104293035,11	MCF-7	breast:
8	chr9:104221036..104221738-chr9:104355766..104356658,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270982	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3404236	chr9:104217731-104222129	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3410243	chr9:104218581-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3403455	chr9:104218656-104221504	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3492403	chr9:104219006-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3492405	chr9:104219397-104221488	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:104217000-104227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:104218200-104222000	Enhancers	HepG2	liver
4	chr9:104218200-104223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:104218600-104228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:104218800-104223400	Weak transcription	NH-A	brain
7	chr9:104219000-104221800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:104220200-104221400	Enhancers	Liver	Liver
9	chr9:104220400-104221400	Enhancers	Fetal Intestine Large	intestine
10	chr9:104220400-104221800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:104220600-104221400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:104220600-104221400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:104220600-104221400	Enhancers	Adipose Nuclei	Adipose
14	chr9:104220600-104221400	Enhancers	Fetal Intestine Small	intestine
15	chr9:104220600-104221800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:104220600-104221800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:104220800-104221400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:104220800-104221800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr9:104221200-104221400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr9:104221200-104221400	Enhancers	Fetal Heart	heart
21	chr9:104221200-104221400	Enhancers	Ovary	ovary
22	chr9:104221200-104221800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr9:104221200-104221800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:104221200-104223400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:104221200-104224400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:104221200-104225200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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