Variant report

Variant	rs7020422
Chromosome Location	chr9:107877226-107877227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107875728..107878263-chr9:108005862..108008830,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10118618	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10820786	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10820787	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10991551	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs10991552	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs12346762	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7023003	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7038361	0.93[ASN][1000 genomes]
rs7851083	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7858499	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7872131	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7020422	OR13D1	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107875200-107877800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:107875800-107880200	Enhancers	Fetal Thymus	thymus
3	chr9:107876000-107877400	Enhancers	Primary T cells from cord blood	blood
4	chr9:107876000-107878800	Enhancers	Dnd41	blood
5	chr9:107876000-107879000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr9:107876200-107878400	Enhancers	Psoas Muscle	Psoas
7	chr9:107876200-107878600	Enhancers	Primary B cells from peripheral blood	blood
8	chr9:107876200-107878600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:107876200-107878600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr9:107876200-107878600	Enhancers	Thymus	Thymus
11	chr9:107876200-107878800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:107876200-107878800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:107876200-107878800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:107876200-107879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr9:107876200-107879000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:107876200-107879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:107876200-107879400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:107876200-107879800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr9:107876200-107880000	Enhancers	Fetal Intestine Small	intestine
22	chr9:107876400-107878000	Enhancers	GM12878-XiMat	blood
23	chr9:107876400-107878600	Enhancers	Primary B cells from cord blood	blood
24	chr9:107876400-107879000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr9:107876400-107879000	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:107876400-107879800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr9:107876400-107880000	Enhancers	Fetal Muscle Leg	muscle
28	chr9:107876600-107878600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr9:107876800-107878000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr9:107876800-107878200	Weak transcription	Brain Germinal Matrix	brain
31	chr9:107876800-107878400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr9:107876800-107878800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:107876800-107879400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr9:107877000-107877800	Weak transcription	Lung	lung
35	chr9:107877000-107877800	Enhancers	NH-A	brain
36	chr9:107877000-107878400	Weak transcription	Spleen	Spleen
37	chr9:107877000-107880000	Enhancers	Colon Smooth Muscle	Colon
38	chr9:107877000-107883600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:107877200-107877400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr9:107877200-107877400	Enhancers	Placenta	Placenta
41	chr9:107877200-107877400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr9:107877200-107877400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr9:107877200-107877600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:107877200-107877600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr9:107877200-107877600	Weak transcription	Liver	Liver
46	chr9:107877200-107877800	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:107877200-107879800	Enhancers	Fetal Intestine Large	intestine

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