Variant report

Variant	rs7872131
Chromosome Location	chr9:107878428-107878429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107877326..107879899-chr9:107880763..107883128,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10116808	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10118618	0.80[ASN][1000 genomes]
rs10126001	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10820787	0.84[ASN][1000 genomes]
rs10991551	0.85[CEU][hapmap]
rs10991552	0.85[CEU][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10991553	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10991554	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12346762	0.85[ASN][1000 genomes]
rs7020422	0.80[ASN][1000 genomes]
rs7023003	0.81[ASN][1000 genomes]
rs7038361	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7851083	0.81[ASN][1000 genomes]
rs7852617	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7852622	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7868363	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7872131	FSD1L	cis	occipital cortex	BrainEAC

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107875800-107880200	Enhancers	Fetal Thymus	thymus
2	chr9:107876000-107878800	Enhancers	Dnd41	blood
3	chr9:107876000-107879000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:107876200-107878600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:107876200-107878600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:107876200-107878600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:107876200-107878600	Enhancers	Thymus	Thymus
8	chr9:107876200-107878800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:107876200-107878800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:107876200-107878800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:107876200-107879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr9:107876200-107879000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:107876200-107879200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:107876200-107879400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr9:107876200-107879400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:107876200-107879800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr9:107876200-107880000	Enhancers	Fetal Intestine Small	intestine
19	chr9:107876400-107878600	Enhancers	Primary B cells from cord blood	blood
20	chr9:107876400-107879000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:107876400-107879000	Enhancers	Primary hematopoietic stem cells	blood
22	chr9:107876400-107879800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr9:107876400-107880000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:107876600-107878600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr9:107876800-107878800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:107876800-107879400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr9:107877000-107880000	Enhancers	Colon Smooth Muscle	Colon
28	chr9:107877000-107883600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:107877200-107879800	Enhancers	Fetal Intestine Large	intestine
30	chr9:107877400-107878600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr9:107877800-107878600	Enhancers	Lung	lung
32	chr9:107877800-107878800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr9:107877800-107878800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:107877800-107879000	Enhancers	Primary T cells from cord blood	blood
35	chr9:107877800-107879000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr9:107877800-107881000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:107877800-107888600	Weak transcription	NH-A	brain
38	chr9:107878000-107879000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr9:107878200-107878600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:107878200-107878600	Enhancers	Adipose Nuclei	Adipose
41	chr9:107878200-107878600	Flanking Active TSS	Liver	Liver
42	chr9:107878200-107878600	Enhancers	Hela-S3	cervix
43	chr9:107878200-107878600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr9:107878200-107878800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr9:107878200-107878800	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr9:107878200-107878800	Enhancers	Placenta	Placenta
47	chr9:107878200-107879000	Enhancers	H1 Cell Line	embryonic stem cell
48	chr9:107878200-107879000	Enhancers	Brain Hippocampus Middle	brain
49	chr9:107878200-107880200	Enhancers	HepG2	liver
50	chr9:107878200-107880400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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