Variant report

Variant	rs7021865
Chromosome Location	chr9:97427974-97427975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7030255	0.86[AFR][1000 genomes]
rs7035462	0.82[AFR][1000 genomes]
rs7852862	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97424600-97431400	Enhancers	Fetal Intestine Large	intestine
2	chr9:97424600-97431400	Enhancers	Fetal Intestine Small	intestine
3	chr9:97425600-97428000	Enhancers	Liver	Liver
4	chr9:97426800-97428000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:97426800-97428200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:97427200-97428000	Enhancers	HSMM	muscle
7	chr9:97427400-97428800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:97427400-97431200	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:97427600-97428400	Enhancers	HepG2	liver
10	chr9:97427800-97428000	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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