Variant report

Variant	rs7035462
Chromosome Location	chr9:97438955-97438956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16911633	1.00[AMR][1000 genomes]
rs2005389	1.00[AMR][1000 genomes]
rs7021865	0.82[AFR][1000 genomes]
rs7030255	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7041122	1.00[AMR][1000 genomes]
rs7852862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97431800-97441000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:97432200-97449800	Weak transcription	Right Atrium	heart
3	chr9:97434400-97439000	Enhancers	NHDF-Ad	bronchial
4	chr9:97435200-97439000	Enhancers	HSMM	muscle
5	chr9:97436800-97439000	Enhancers	HSMMtube	muscle
6	chr9:97436800-97439000	Enhancers	Osteobl	bone
7	chr9:97436800-97440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:97437000-97439000	Enhancers	Adipose Nuclei	Adipose
9	chr9:97437000-97441200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:97437200-97439000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:97437600-97440600	Weak transcription	Aorta	Aorta
12	chr9:97437800-97441800	Weak transcription	A549	lung
13	chr9:97438000-97444000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:97438200-97439400	Weak transcription	Fetal Stomach	stomach
15	chr9:97438400-97439200	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:97438400-97439400	Weak transcription	Fetal Lung	lung
17	chr9:97438400-97440800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:97438600-97439000	Enhancers	Ovary	ovary
19	chr9:97438600-97440800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:97438800-97440200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:97438800-97443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:97438800-97444000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr9:97438800-97449800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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