Variant report

Variant	rs7022515
Chromosome Location	chr9:79008451-79008452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:79007540..79010172-chr9:79074126..79075718,2	MCF-7	breast:
2	chr9:79007886..79011336-chr9:79013243..79018063,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234618	Chromatin interaction
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10118828	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv3326861	chr9:79008157-79010705	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78992200-79008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:78995200-79008600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:78998800-79008600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:78999400-79008600	Weak transcription	Spleen	Spleen
5	chr9:79003000-79008600	Weak transcription	Esophagus	oesophagus
6	chr9:79007200-79008600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:79007200-79010000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr9:79007400-79009800	Active TSS	Duodenum Mucosa	Duodenum
9	chr9:79007400-79010200	Active TSS	Rectal Mucosa Donor 31	rectum
10	chr9:79007600-79008600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:79007600-79008600	Enhancers	Lung	lung
12	chr9:79007600-79008800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:79007600-79010000	Active TSS	GM12878-XiMat	blood
14	chr9:79007600-79010000	Active TSS	HMEC	breast
15	chr9:79007600-79010200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:79007600-79010400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:79007600-79010400	Active TSS	NHDF-Ad	bronchial
18	chr9:79007600-79010600	Active TSS	NHEK	skin
19	chr9:79007600-79010800	Active TSS	Brain Anterior Caudate	brain
20	chr9:79007800-79008600	Weak transcription	Gastric	stomach
21	chr9:79007800-79008600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr9:79007800-79008600	Weak transcription	Small Intestine	intestine
23	chr9:79007800-79008800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:79007800-79008800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:79007800-79010000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:79007800-79010000	Active TSS	Fetal Brain Female	brain
27	chr9:79007800-79010200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:79007800-79010200	Active TSS	Fetal Intestine Large	intestine
29	chr9:79007800-79010200	Active TSS	Fetal Intestine Small	intestine
30	chr9:79007800-79010400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr9:79007800-79010400	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr9:79007800-79010400	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr9:79007800-79010400	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr9:79007800-79010400	Active TSS	Colonic Mucosa	Colon
35	chr9:79007800-79010400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr9:79007800-79010400	Active TSS	A549	lung
37	chr9:79007800-79010400	Active TSS	K562	blood
38	chr9:79007800-79010600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:79008000-79008600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:79008000-79008600	Active TSS	HepG2	liver
41	chr9:79008000-79008800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr9:79008000-79008800	Flanking Active TSS	Liver	Liver
43	chr9:79008000-79010200	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr9:79008000-79010400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:79008000-79010400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:79008000-79010600	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr9:79008200-79008600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr9:79008200-79009600	Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr9:79008200-79009800	Active TSS	HUVEC	blood vessel
50	chr9:79008200-79010000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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