Variant report

Variant	rs7024026
Chromosome Location	chr9:15138679-15138680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NANOG	chr9:15138347-15138702	H1-hESC	embryonic stem cell:	n/a	n/a
2	HDAC2	chr9:15138202-15138688	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr9:15138274-15138720	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15137110..15140066-chr9:15141135..15143979,2	K562	blood:

Variant related genes	Relation type
RNU6-559P	TF binding region
ENSG00000251960	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7023468	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7031799	1.00[YRI][hapmap]
rs7042251	1.00[AFR][1000 genomes]
rs7042255	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15135000-15138800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:15135000-15139600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:15135400-15140200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:15135400-15146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:15135600-15142600	Weak transcription	Dnd41	blood
6	chr9:15135600-15144600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr9:15135800-15139200	Weak transcription	Fetal Stomach	stomach
8	chr9:15135800-15139400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:15135800-15139400	Weak transcription	Osteobl	bone
10	chr9:15135800-15139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:15135800-15140600	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:15135800-15142600	Weak transcription	Fetal Lung	lung
13	chr9:15135800-15144400	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:15135800-15144800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:15135800-15146000	Weak transcription	Brain Germinal Matrix	brain
16	chr9:15136600-15138800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:15136600-15138800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr9:15137000-15140200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:15137200-15156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:15137400-15147000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:15138400-15139400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:15138400-15139800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr9:15138600-15138800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr9:15138600-15138800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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