Variant report

Variant	rs7042255
Chromosome Location	chr9:15135995-15135996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57007297	1.00[AMR][1000 genomes]
rs7023468	1.00[AFR][1000 genomes]
rs7024026	1.00[AFR][1000 genomes]
rs7040789	1.00[AMR][1000 genomes]
rs7042251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15125200-15136600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:15134600-15137200	Enhancers	Fetal Thymus	thymus
3	chr9:15135000-15138000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:15135000-15138000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:15135000-15138800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:15135000-15139600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:15135200-15137000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:15135400-15137400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:15135400-15140200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:15135400-15146200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:15135600-15136200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:15135600-15136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:15135600-15136600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:15135600-15136800	Weak transcription	K562	blood
15	chr9:15135600-15137000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:15135600-15142600	Weak transcription	Dnd41	blood
17	chr9:15135600-15144600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:15135800-15136000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:15135800-15136800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:15135800-15136800	Weak transcription	Thymus	Thymus
21	chr9:15135800-15139200	Weak transcription	Fetal Stomach	stomach
22	chr9:15135800-15139400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:15135800-15139400	Weak transcription	Osteobl	bone
24	chr9:15135800-15139600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:15135800-15140600	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:15135800-15142600	Weak transcription	Fetal Lung	lung
27	chr9:15135800-15144400	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:15135800-15144800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:15135800-15146000	Weak transcription	Brain Germinal Matrix	brain

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