Variant report

Variant	rs7025092
Chromosome Location	chr9:86619376-86619377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86569088..86571994-chr9:86618139..86620205,2	K562	blood:
2	chr9:86569088..86572971-chr9:86618139..86621506,3	K562	blood:
3	chr9:86612231..86616038-chr9:86617136..86619825,3	K562	blood:

Variant related genes	Relation type
ENSG00000165118	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7854496	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3328820	chr9:86613612-86634313	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86596600-86619600	Weak transcription	Gastric	stomach
3	chr9:86596800-86619600	Weak transcription	Small Intestine	intestine
4	chr9:86596800-86621400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:86596800-86621600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:86597000-86621200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:86597000-86621600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:86597400-86628800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:86598800-86622400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:86602000-86620800	Weak transcription	NHLF	lung
11	chr9:86602000-86623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:86602400-86627200	Weak transcription	Left Ventricle	heart
13	chr9:86602600-86620000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:86603600-86619600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:86603800-86621200	Weak transcription	Hela-S3	cervix
16	chr9:86604000-86622600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:86604000-86626200	Weak transcription	Pancreas	Pancrea
18	chr9:86604200-86621400	Weak transcription	Thymus	Thymus
19	chr9:86604200-86623400	Weak transcription	Fetal Stomach	stomach
20	chr9:86605000-86622400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:86605200-86620600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:86605400-86622200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:86606000-86624200	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:86607400-86619400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:86607800-86622600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:86607800-86622800	Weak transcription	K562	blood
27	chr9:86611000-86623000	Weak transcription	Psoas Muscle	Psoas
28	chr9:86611200-86619800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:86613200-86621200	Weak transcription	Adipose Nuclei	Adipose
30	chr9:86614000-86619400	Weak transcription	Fetal Intestine Small	intestine
31	chr9:86615600-86621400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:86616400-86620000	Weak transcription	HSMMtube	muscle
33	chr9:86616600-86619400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:86616800-86620800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:86616800-86621200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:86616800-86621400	Weak transcription	HepG2	liver
37	chr9:86616800-86621600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:86616800-86621800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:86616800-86623800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:86617000-86619600	Weak transcription	Fetal Intestine Large	intestine
41	chr9:86617000-86621600	Weak transcription	Fetal Lung	lung
42	chr9:86617000-86621600	Weak transcription	Fetal Thymus	thymus
43	chr9:86617000-86622200	Weak transcription	Fetal Brain Female	brain
44	chr9:86617000-86622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:86617000-86622800	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr9:86617000-86622800	Weak transcription	Fetal Kidney	kidney
47	chr9:86617400-86621600	Weak transcription	Primary B cells from cord blood	blood
48	chr9:86617600-86620600	Weak transcription	Liver	Liver
49	chr9:86617600-86620800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr9:86617600-86620800	Weak transcription	NHDF-Ad	bronchial

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