Variant report

Variant	rs7026563
Chromosome Location	chr9:73711655-73711656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12551523	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552248	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13285838	0.86[AMR][1000 genomes]
rs17056164	0.81[EUR][1000 genomes]
rs57502310	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6560173	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027234	0.87[AFR][1000 genomes]
rs7034755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873024	0.86[AMR][1000 genomes]
rs972387	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7026563	ALDH1A1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73691400-73716200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:73694800-73718800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73709400-73712000	Enhancers	Fetal Intestine Small	intestine
4	chr9:73710200-73712800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:73710600-73713400	Enhancers	Fetal Intestine Large	intestine
6	chr9:73711000-73712000	Flanking Active TSS	Liver	Liver
7	chr9:73711200-73712000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:73711200-73712000	Enhancers	Duodenum Mucosa	Duodenum
9	chr9:73711200-73712000	Enhancers	Stomach Mucosa	stomach
10	chr9:73711400-73712000	Enhancers	Fetal Brain Male	brain
11	chr9:73711400-73712000	Enhancers	Pancreas	Pancrea
12	chr9:73711400-73712000	Active TSS	HepG2	liver
13	chr9:73711400-73713200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr9:73711600-73712000	Bivalent Enhancer	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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