Variant report

Variant	rs7027234
Chromosome Location	chr9:73712141-73712142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12552248	0.80[AFR][1000 genomes]
rs17593251	0.82[EUR][1000 genomes]
rs34975390	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35683807	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57502310	0.83[AFR][1000 genomes]
rs7026563	0.87[AFR][1000 genomes]
rs7034755	0.80[AFR][1000 genomes]
rs72731763	0.81[EUR][1000 genomes]
rs72731767	0.81[EUR][1000 genomes]
rs72731768	0.82[EUR][1000 genomes]
rs72731783	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7027234	ALDH1A1	cis	parietal	SCAN
rs7027234	C9orf85	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73691400-73716200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:73694800-73718800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73710200-73712800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:73710600-73713400	Enhancers	Fetal Intestine Large	intestine
5	chr9:73711400-73713200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr9:73711800-73713000	Enhancers	Adipose Nuclei	Adipose
7	chr9:73712000-73712400	Flanking Active TSS	HepG2	liver
8	chr9:73712000-73712800	Weak transcription	Fetal Intestine Small	intestine
9	chr9:73712000-73713200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:73712000-73714000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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