Variant report

Variant	rs7027475
Chromosome Location	chr9:93807729-93807730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16907110	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55912824	1.00[AMR][1000 genomes]
rs57354755	1.00[AMR][1000 genomes]
rs57733345	1.00[AMR][1000 genomes]
rs61241044	1.00[AMR][1000 genomes]
rs6479327	0.85[ASW][hapmap];0.83[LWK][hapmap];0.88[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73505592	1.00[AMR][1000 genomes]
rs7858701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972278	chr9:93806856-93807852	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93801800-93809800	Weak transcription	A549	lung
2	chr9:93802400-93810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93806000-93807800	Enhancers	Colon Smooth Muscle	Colon
4	chr9:93806000-93809400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:93806200-93809400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:93806600-93808000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93806800-93807800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:93806800-93807800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:93806800-93809400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:93807000-93808200	Enhancers	HepG2	liver
11	chr9:93807200-93807800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:93807400-93808200	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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