Variant report

Variant	rs7028032
Chromosome Location	chr9:18362601-18362602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10511652	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810958	0.88[ASN][1000 genomes]
rs12338293	1.00[ASN][1000 genomes]
rs12341057	0.83[ASN][1000 genomes]
rs12350298	0.83[ASN][1000 genomes]
rs1340044	0.98[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2791442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2809864	0.82[AMR][1000 genomes]
rs4961642	0.99[ASN][1000 genomes]
rs7020284	0.98[ASN][1000 genomes]
rs7024252	0.98[ASN][1000 genomes]
rs7031026	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7047314	0.92[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7859508	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7861774	0.81[ASN][1000 genomes]
rs9407897	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1831194	chr9:18355044-18369216	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18333400-18368200	Weak transcription	Aorta	Aorta
2	chr9:18356400-18363200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:18357400-18364200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18358000-18364200	Enhancers	NHDF-Ad	bronchial
5	chr9:18358000-18364400	Enhancers	Osteobl	bone
6	chr9:18359800-18363000	Weak transcription	HSMMtube	muscle
7	chr9:18360000-18364000	Enhancers	Fetal Lung	lung
8	chr9:18360400-18363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:18360600-18362800	Weak transcription	NH-A	brain
10	chr9:18360600-18363200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:18360600-18363200	Weak transcription	Psoas Muscle	Psoas
12	chr9:18361000-18362800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:18361000-18363000	Weak transcription	NHLF	lung
14	chr9:18361200-18363000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:18361600-18364200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr9:18361600-18368400	Weak transcription	HUVEC	blood vessel
17	chr9:18362000-18363000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:18362000-18363200	Weak transcription	Left Ventricle	heart
19	chr9:18362200-18363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:18362200-18363400	Weak transcription	Fetal Kidney	kidney
21	chr9:18362400-18364000	Enhancers	Colon Smooth Muscle	Colon
22	chr9:18362400-18364000	Enhancers	HSMM	muscle
23	chr9:18362400-18364200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:18362400-18364400	Enhancers	Fetal Stomach	stomach
25	chr9:18362600-18363000	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:18362600-18363000	Flanking Active TSS	Fetal Heart	heart
27	chr9:18362600-18363000	Enhancers	Right Ventricle	heart
28	chr9:18362600-18363200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr9:18362600-18363600	Weak transcription	Brain Hippocampus Middle	brain
30	chr9:18362600-18367400	Enhancers	Primary B cells from cord blood	blood

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