Variant report

Variant	rs7859508
Chromosome Location	chr9:18379612-18379613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10511652	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2791442	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7028032	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9407897	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18368400-18381800	Weak transcription	Aorta	Aorta
2	chr9:18378000-18380000	Enhancers	Osteobl	bone
3	chr9:18378600-18379800	Enhancers	Hela-S3	cervix
4	chr9:18378600-18379800	Enhancers	HMEC	breast
5	chr9:18378600-18380200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:18378600-18381000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:18378800-18379800	Enhancers	HSMM	muscle
8	chr9:18378800-18379800	Enhancers	HUVEC	blood vessel
9	chr9:18378800-18380000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:18378800-18380000	Enhancers	NHEK	skin
11	chr9:18378800-18380200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr9:18378800-18380400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:18378800-18380600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:18379000-18379800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:18379000-18379800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:18379000-18379800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:18379000-18380000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:18379000-18380000	Enhancers	NH-A	brain
19	chr9:18379000-18380200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr9:18379000-18380400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:18379000-18380400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:18379200-18379800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr9:18379400-18379800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr9:18379400-18380400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:18379600-18384000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:18379600-18392400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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