Variant report

Variant	rs7028657
Chromosome Location	chr9:72924505-72924506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10868798	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1104709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11142141	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142346	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11142355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180085	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1180090	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1180093	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1180095	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1180109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1180116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338030	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12346675	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12684881	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2183361	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4744593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58704591	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62570318	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72712267	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72712271	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72712284	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847861	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7868421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873075	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
3	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
5	chr9:72877000-72939800	Weak transcription	Gastric	stomach
6	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
12	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
14	chr9:72907000-72924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:72908800-72942800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:72909200-72927400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:72910200-72924600	Weak transcription	Psoas Muscle	Psoas
19	chr9:72910800-72929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:72911400-72930000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:72911600-72925000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:72912000-72927400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr9:72912000-72943000	Strong transcription	HSMM	muscle
24	chr9:72912200-72925800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr9:72912200-72927600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr9:72912200-72929200	Strong transcription	Osteobl	bone
27	chr9:72912400-72930600	Strong transcription	Fetal Intestine Large	intestine
28	chr9:72912600-72947800	Strong transcription	Placenta	Placenta
29	chr9:72912800-72927600	Strong transcription	Fetal Thymus	thymus
30	chr9:72913600-72928800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:72913600-72928800	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:72913800-72957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:72914000-72929400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:72915000-72927400	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr9:72915400-72935200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:72917000-72935200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:72917400-72927200	Weak transcription	HepG2	liver
38	chr9:72917400-72933800	Weak transcription	Brain Substantia Nigra	brain
39	chr9:72917600-72933800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr9:72917800-72928400	Weak transcription	HSMMtube	muscle
41	chr9:72917800-72928600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:72918000-72928000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:72918200-72926800	Weak transcription	Right Ventricle	heart
44	chr9:72918200-72942800	Weak transcription	Aorta	Aorta
45	chr9:72919200-72929000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:72919400-72941600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:72919600-72940000	Weak transcription	Pancreas	Pancrea
48	chr9:72919800-72933000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr9:72920000-72931600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:72920200-72926600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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