Variant report

Variant	rs7029047
Chromosome Location	chr9:78866648-78866649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10869739	0.91[AFR][1000 genomes]
rs12000462	1.00[EUR][1000 genomes]
rs2067627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28607333	1.00[EUR][1000 genomes]
rs35340990	1.00[EUR][1000 genomes]
rs56914572	1.00[EUR][1000 genomes]
rs57794478	1.00[EUR][1000 genomes]
rs7027657	1.00[EUR][1000 genomes]
rs73464506	1.00[EUR][1000 genomes]
rs7861790	0.84[AFR][1000 genomes]
rs903545	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv508552	chr9:78864913-78956326	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78855800-78881800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:78856600-78870400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:78862000-78871800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:78862400-78872400	Weak transcription	Esophagus	oesophagus
5	chr9:78864400-78867400	Weak transcription	Aorta	Aorta
6	chr9:78864600-78874600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:78866200-78872000	Weak transcription	Fetal Intestine Small	intestine
8	chr9:78866600-78866800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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