Variant report

Variant	rs903545
Chromosome Location	chr9:78848542-78848543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10869739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390138	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036054	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067627	0.94[AFR][1000 genomes]
rs2495210	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3913045	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029047	0.94[AFR][1000 genomes]
rs7038642	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851394	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861790	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs903546	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924012	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78839600-78853800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:78841200-78859400	Weak transcription	Colonic Mucosa	Colon
3	chr9:78842200-78850000	Strong transcription	Fetal Intestine Small	intestine
4	chr9:78842200-78850200	Weak transcription	Small Intestine	intestine
5	chr9:78843200-78851400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:78844400-78859000	Strong transcription	Fetal Intestine Large	intestine
7	chr9:78846600-78849000	Enhancers	Ovary	ovary
8	chr9:78846800-78850800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr9:78847400-78849200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:78847400-78851000	Weak transcription	Pancreas	Pancrea
11	chr9:78848000-78849400	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr9:78848200-78850000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr9:78848200-78853200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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