Variant report

Variant	rs7030026
Chromosome Location	chr9:96803615-96803616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10116369	1.00[CEU][hapmap]
rs10123498	1.00[CEU][hapmap]
rs10125475	1.00[CEU][hapmap]
rs12341848	1.00[CEU][hapmap]
rs6479531	1.00[CEU][hapmap]
rs7036037	1.00[CEU][hapmap]
rs7851345	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96793800-96804800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:96794200-96828000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:96794400-96804600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:96794600-96804600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:96794800-96805000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:96794800-96805200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:96794800-96805600	Weak transcription	HSMM	muscle
8	chr9:96795400-96804600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:96795400-96823800	Weak transcription	Left Ventricle	heart
10	chr9:96795800-96804600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:96798200-96822400	Weak transcription	Fetal Lung	lung
12	chr9:96800000-96818600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:96800400-96804800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:96802800-96804400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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