Variant report
| Variant | rs10123498 |
|---|---|
| Chromosome Location | chr9:96971233-96971234 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96791501..96793535-chr9:96970012..96971868,2 | MCF-7 | breast: | |
| 2 | chr9:96927341..96929723-chr9:96969750..96973074,4 | K562 | blood: | |
| 3 | chr9:96967187..96969363-chr9:96970249..96972956,2 | K562 | blood: | |
| 4 | chr9:96937762..96940255-chr9:96971058..96972798,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000199165 | Chromatin interaction |
| ENSG00000269929 | Chromatin interaction |
| ENSG00000158079 | Chromatin interaction |
| ENSG00000269946 | Chromatin interaction |
| ENSG00000199072 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10081759 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10116369 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10116630 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12335636 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12338528 | 1.00[EUR][1000 genomes] |
| rs12341848 | 1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12345658 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28493183 | 1.00[EUR][1000 genomes] |
| rs6479531 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7030026 | 1.00[CEU][hapmap] |
| rs7036037 | 1.00[CEU][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7046683 | 1.00[EUR][1000 genomes] |
| rs7851345 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv482457 | chr9:96813852-96996170 | Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 217 gene(s) | inside rSNPs | diseases |
| 2 | nsv831655 | chr9:96834042-97042009 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 218 gene(s) | inside rSNPs | diseases |
| 3 | esv3394266 | chr9:96935210-97045514 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 195 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96961200-96973600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
