Variant report

Variant	rs7046683
Chromosome Location	chr9:96910612-96910613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96900996..96905420-chr9:96905582..96911723,7	K562	blood:
2	chr9:96909142..96911762-chr9:96912280..96913850,2	K562	blood:
3	chr9:96909599..96912003-chr9:96928176..96929680,2	K562	blood:
4	chr9:96909256..96912834-chr9:96914432..96917620,5	K562	blood:
5	chr9:96904365..96907195-chr9:96908218..96912337,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10081759	1.00[EUR][1000 genomes]
rs10116369	1.00[EUR][1000 genomes]
rs10116630	1.00[EUR][1000 genomes]
rs10123498	1.00[EUR][1000 genomes]
rs12335636	1.00[EUR][1000 genomes]
rs12338528	1.00[EUR][1000 genomes]
rs12341848	1.00[EUR][1000 genomes]
rs12345658	1.00[EUR][1000 genomes]
rs28493183	1.00[EUR][1000 genomes]
rs6479531	1.00[EUR][1000 genomes]
rs7036037	1.00[EUR][1000 genomes]
rs7851345	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482457	chr9:96813852-96996170	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	217 gene(s)	inside rSNPs	diseases
2	nsv831655	chr9:96834042-97042009	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	218 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96903000-96912000	Weak transcription	HepG2	liver
2	chr9:96903800-96910800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96904000-96912800	Weak transcription	NH-A	brain
4	chr9:96904000-96927200	Weak transcription	Thymus	Thymus
5	chr9:96904400-96912600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:96904600-96913200	Weak transcription	Adipose Nuclei	Adipose
7	chr9:96904800-96912000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:96904800-96912000	Weak transcription	Spleen	Spleen
9	chr9:96906800-96911000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:96907200-96912200	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:96907400-96913200	Weak transcription	Lung	lung
12	chr9:96909400-96913000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:96910000-96911000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:96910000-96911000	Enhancers	Esophagus	oesophagus
15	chr9:96910200-96911200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:96910200-96913400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:96910200-96914000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:96910200-96914200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:96910400-96913600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:96910600-96912600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr9:96910600-96913400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:96910600-96913400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr9:96910600-96913600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:96910600-96913600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr9:96910600-96914000	Enhancers	H1 Cell Line	embryonic stem cell

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