Variant report

Variant	rs7030167
Chromosome Location	chr9:116791161-116791162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116790423..116792075-chr9:116796145..116798167,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10739398	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10759675	0.93[EUR][1000 genomes]
rs10759676	1.00[CEU][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes]
rs10759677	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10817552	0.95[EUR][1000 genomes]
rs10817555	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10817556	0.97[EUR][1000 genomes]
rs10817558	0.94[EUR][1000 genomes]
rs10982026	0.90[EUR][1000 genomes]
rs10982029	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10982031	1.00[CEU][hapmap];0.87[TSI][hapmap];0.97[EUR][1000 genomes]
rs10982032	0.96[EUR][1000 genomes]
rs10982034	0.98[EUR][1000 genomes]
rs10982042	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs11788633	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11788661	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11788667	0.94[EUR][1000 genomes]
rs11790678	0.94[EUR][1000 genomes]
rs11791230	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12238713	0.86[CHB][hapmap]
rs12551686	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12686226	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs12686727	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13298270	1.00[CEU][hapmap];0.84[TSI][hapmap];0.95[EUR][1000 genomes]
rs1590367	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs2025391	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs2078305	0.88[CEU][hapmap];0.84[TSI][hapmap];0.94[EUR][1000 genomes]
rs35841848	0.94[EUR][1000 genomes]
rs3748182	0.95[EUR][1000 genomes]
rs3748183	0.95[EUR][1000 genomes]
rs3860174	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs4978561	1.00[CEU][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes]
rs4978562	1.00[CEU][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes]
rs4979317	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4979318	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4979319	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4979320	1.00[CEU][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes]
rs4979322	0.95[EUR][1000 genomes]
rs4979326	1.00[CEU][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes]
rs4979327	1.00[CEU][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes]
rs7035891	0.94[EUR][1000 genomes]
rs7041360	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7041524	1.00[CEU][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes]
rs7042021	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7858120	1.00[CEU][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes]
rs942286	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs942287	1.00[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7030167	DEC1	cis	parietal	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116733400-116800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:116764600-116797200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:116766000-116792600	Weak transcription	Stomach Mucosa	stomach
4	chr9:116766000-116798000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:116766200-116799000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:116766600-116811200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:116768400-116794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:116773600-116809200	Weak transcription	Fetal Heart	heart
9	chr9:116774000-116791200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:116774000-116791200	Weak transcription	Fetal Brain Male	brain
11	chr9:116774200-116798400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:116780200-116798600	Weak transcription	Colonic Mucosa	Colon
13	chr9:116780600-116796800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:116780800-116791200	Weak transcription	Thymus	Thymus
15	chr9:116780800-116792800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:116780800-116796800	Weak transcription	Brain Angular Gyrus	brain
17	chr9:116780800-116798000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:116780800-116800200	Weak transcription	Esophagus	oesophagus
19	chr9:116781000-116797600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:116784000-116798000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr9:116785200-116796000	Weak transcription	NHDF-Ad	bronchial
22	chr9:116785200-116811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:116785400-116798200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:116785400-116799000	Weak transcription	Brain Substantia Nigra	brain
25	chr9:116785400-116810600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:116785800-116791200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:116785800-116798000	Weak transcription	NH-A	brain
28	chr9:116785800-116798400	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:116786000-116792400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:116786400-116791200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:116786400-116791400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:116786400-116796800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:116786400-116798800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr9:116786600-116792400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:116786800-116793800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:116786800-116794200	Strong transcription	Fetal Stomach	stomach
37	chr9:116786800-116794800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:116786800-116799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:116787000-116791400	Weak transcription	Osteobl	bone
40	chr9:116787000-116791600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:116787000-116792800	Weak transcription	K562	blood
42	chr9:116787000-116796400	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:116787000-116799200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:116787000-116800200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:116787000-116803000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:116787000-116812800	Weak transcription	Primary B cells from cord blood	blood
47	chr9:116787200-116791600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:116787200-116794200	Weak transcription	Fetal Brain Female	brain
49	chr9:116787200-116799200	Strong transcription	Fetal Intestine Small	intestine
50	chr9:116787400-116791200	Weak transcription	A549	lung

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