Variant report

Variant	rs7032479
Chromosome Location	chr9:97704610-97704611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97702356..97704660-chr9:97713620..97715867,3	MCF-7	breast:
2	chr9:97702032..97704710-chr9:97710037..97711547,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4647531	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647556	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647557	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59196867	1.00[AMR][1000 genomes]
rs61739340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7022142	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7029032	1.00[AMR][1000 genomes]
rs7032483	1.00[AMR][1000 genomes]
rs73657031	1.00[AMR][1000 genomes]
rs7860048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1045849	chr9:97688810-97741336	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97670600-97766000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:97682000-97713800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97684800-97711000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:97685200-97714600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:97687000-97714000	Weak transcription	Thymus	Thymus
6	chr9:97691800-97710800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:97692200-97713000	Weak transcription	Primary T cells from cord blood	blood
8	chr9:97692400-97707600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:97693400-97712600	Weak transcription	Gastric	stomach
10	chr9:97695600-97709000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:97699800-97706400	Weak transcription	Brain Angular Gyrus	brain
12	chr9:97700200-97707200	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:97700200-97707400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:97700200-97707400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:97700200-97707600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:97700200-97707600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:97700200-97707800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:97700200-97708200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:97700200-97714600	Weak transcription	Fetal Stomach	stomach
20	chr9:97700200-97718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:97700400-97707200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:97700600-97706600	Weak transcription	NHEK	skin
23	chr9:97701200-97707600	Weak transcription	K562	blood
24	chr9:97702400-97705000	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr9:97702600-97704800	Enhancers	Fetal Intestine Small	intestine
26	chr9:97702600-97705200	Enhancers	Fetal Intestine Large	intestine
27	chr9:97703000-97705000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:97703000-97705000	Enhancers	Liver	Liver
29	chr9:97703200-97705000	Flanking Active TSS	A549	lung
30	chr9:97703600-97706600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:97703600-97707600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:97703600-97710600	Weak transcription	Placenta	Placenta
33	chr9:97703800-97704800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr9:97703800-97704800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr9:97703800-97705200	Enhancers	HepG2	liver
36	chr9:97703800-97706200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:97703800-97707200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:97703800-97707600	Weak transcription	Colonic Mucosa	Colon
39	chr9:97703800-97707600	Weak transcription	Esophagus	oesophagus
40	chr9:97703800-97707800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:97703800-97712400	Weak transcription	Spleen	Spleen
42	chr9:97703800-97713000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:97704000-97704800	Enhancers	HUVEC	blood vessel
44	chr9:97704000-97706400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:97704000-97706400	Weak transcription	Small Intestine	intestine
46	chr9:97704000-97706400	Weak transcription	HSMMtube	muscle
47	chr9:97704000-97706600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:97704000-97706600	Weak transcription	HMEC	breast
49	chr9:97704000-97706800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:97704000-97707200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links