Variant report

Variant	rs73657031
Chromosome Location	chr9:97794111-97794112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:97794089..97795756-chr9:97801437..97804399,2	K562	blood:
2	chr9:97793038..97795418-chr9:97797884..97800566,2	K562	blood:
3	chr9:97683038..97684583-chr9:97793134..97794968,2	MCF-7	breast:
4	chr9:97792211..97795140-chr9:97806961..97811123,4	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIATL1-7	chr9:97792029-97794143	ENSG00000251631
2	lnc-FANCC-3	chr9:97792029-97794141	NONHSAT133343

No data

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4647483	1.00[AMR][1000 genomes]
rs4647489	1.00[AMR][1000 genomes]
rs4647531	1.00[AMR][1000 genomes]
rs4647556	1.00[AMR][1000 genomes]
rs4647557	1.00[AMR][1000 genomes]
rs59196867	1.00[AMR][1000 genomes]
rs61739340	1.00[AMR][1000 genomes]
rs7022142	1.00[AMR][1000 genomes]
rs7032479	1.00[AMR][1000 genomes]
rs7860048	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97770800-97810000	Weak transcription	Primary T cells from cord blood	blood
2	chr9:97777400-97794200	Weak transcription	Thymus	Thymus
3	chr9:97787800-97795800	Genic enhancers	Osteobl	bone
4	chr9:97788000-97794800	Genic enhancers	Muscle Satellite Cultured Cells	--
5	chr9:97788200-97794400	Weak transcription	K562	blood
6	chr9:97788400-97795800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:97788800-97795000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:97788800-97795800	Enhancers	Psoas Muscle	Psoas
9	chr9:97789000-97794200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:97789000-97794400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:97789000-97806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:97790000-97794400	Genic enhancers	NH-A	brain
13	chr9:97790000-97795800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:97790000-97796800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:97790200-97794600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:97790200-97794600	Genic enhancers	Left Ventricle	heart
17	chr9:97790200-97795600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:97790200-97795800	Enhancers	Right Atrium	heart
19	chr9:97790200-97796000	Enhancers	Brain Angular Gyrus	brain
20	chr9:97790200-97796400	Genic enhancers	HSMM	muscle
21	chr9:97790600-97794800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr9:97790600-97795800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:97790800-97795600	Genic enhancers	Fetal Intestine Small	intestine
24	chr9:97791200-97795600	Genic enhancers	Liver	Liver
25	chr9:97791200-97795800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:97791400-97795800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:97791600-97799600	Weak transcription	Hela-S3	cervix
28	chr9:97791600-97800000	Weak transcription	Placenta	Placenta
29	chr9:97791800-97795400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:97792000-97794400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:97792200-97794400	Weak transcription	Ovary	ovary
32	chr9:97792600-97794200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:97792600-97794200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr9:97792600-97795800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr9:97792800-97794200	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr9:97792800-97794600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
37	chr9:97792800-97795000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr9:97792800-97795600	Genic enhancers	Fetal Stomach	stomach
39	chr9:97792800-97795600	Enhancers	Right Ventricle	heart
40	chr9:97792800-97795800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr9:97792800-97795800	Enhancers	Stomach Mucosa	stomach
42	chr9:97793000-97794200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:97793000-97794400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:97793000-97795800	Enhancers	Brain Cingulate Gyrus	brain
45	chr9:97793000-97795800	Enhancers	Pancreas	Pancrea
46	chr9:97793000-97796000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:97793000-97797200	Enhancers	Brain Substantia Nigra	brain
48	chr9:97793000-97800000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:97793200-97794400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:97793200-97794800	Enhancers	Brain Germinal Matrix	brain

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