Variant report

Variant	rs7035334
Chromosome Location	chr9:96726451-96726452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10125538	0.86[CEU][hapmap]
rs10761307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821282	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1316934	0.87[AFR][1000 genomes]
rs2153060	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2153061	0.86[AFR][1000 genomes]
rs4744306	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs932949	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
2	chr9:96723000-96729800	Weak transcription	Gastric	stomach
3	chr9:96725000-96726600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:96725000-96726800	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr9:96725000-96727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
7	chr9:96725800-96726600	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:96726400-96726600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:96726400-96726600	Bivalent Enhancer	Placenta	Placenta
10	chr9:96726400-96726600	Genic enhancers	Fetal Stomach	stomach
11	chr9:96726400-96726800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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