Variant report

Variant	rs1316934
Chromosome Location	chr9:96729516-96729517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10761307	0.89[AFR][1000 genomes]
rs10761311	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761312	0.88[ASN][1000 genomes]
rs10821277	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821278	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821280	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821281	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821283	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12338762	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592152	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1854836	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2094929	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2153061	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2225937	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7035334	0.87[AFR][1000 genomes]
rs7868385	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96729800	Weak transcription	Gastric	stomach
2	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
3	chr9:96726600-96730400	Strong transcription	Fetal Stomach	stomach
4	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
5	chr9:96728400-96729800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96728600-96730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96728800-96730600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96729400-96729600	Enhancers	Esophagus	oesophagus
9	chr9:96729400-96729800	Transcr. at gene 5' and 3'	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:96729400-96729800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:96729400-96730000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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