Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96724820..96727040-chr9:96730080..96732897,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10761311	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761312	0.90[ASN][1000 genomes]
rs10821276	0.81[EUR][1000 genomes]
rs10821277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821278	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821280	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821281	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821283	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993009	0.81[EUR][1000 genomes]
rs11795301	0.81[EUR][1000 genomes]
rs1316934	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592152	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1854836	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933670	0.82[EUR][1000 genomes]
rs2094929	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153061	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2225937	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57094654	0.81[EUR][1000 genomes]
rs7866395	0.81[EUR][1000 genomes]
rs7868385	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3520746	chr9:96730253-96730812	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2072718	chr9:96730258-96730801	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3520743	chr9:96730289-96730735	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3546	chr9:96730324-96730776	Genic enhancers Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
2	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
3	chr9:96728600-96730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96729600-96730800	Weak transcription	Esophagus	oesophagus
5	chr9:96729800-96732800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96730000-96731600	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:96730400-96730800	Weak transcription	Fetal Stomach	stomach
8	chr9:96730400-96731600	Enhancers	Gastric	stomach
9	chr9:96730600-96730800	Enhancers	Placenta	Placenta
10	chr9:96730600-96731000	Enhancers	HepG2	liver
11	chr9:96730600-96731200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr9:96730600-96731400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:96730600-96731400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:96730600-96731400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr9:96730600-96731400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:96730600-96731400	Enhancers	Fetal Muscle Leg	muscle
17	chr9:96730600-96731400	Enhancers	HSMMtube	muscle
18	chr9:96730600-96731600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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