Variant report

Variant	rs10821276
Chromosome Location	chr9:96727596-96727597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96712713..96719267-chr9:96721537..96727951,10	MCF-7	breast:
2	chr9:96726706..96728615-chr9:96972713..96975369,2	MCF-7	breast:
3	chr9:96722430..96724465-chr9:96726832..96729189,2	K562	blood:
4	chr9:96726952..96729685-chr9:96738471..96741354,2	K562	blood:
5	chr9:96726783..96728423-chr9:96736812..96738493,2	MCF-7	breast:
6	chr9:96443866..96445187-chr9:96726929..96728716,7	MCF-7	breast:
7	chr9:96718522..96721455-chr9:96725392..96727968,2	MCF-7	breast:
8	chr9:96727259..96729626-chr9:96757236..96759777,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235601	Chromatin interaction
ENSG00000131668	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10114421	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10114811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10116489	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10116746	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10122071	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761314	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821272	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs10821277	0.81[EUR][1000 genomes]
rs10821278	0.81[EUR][1000 genomes]
rs10821281	1.00[CEU][hapmap]
rs10821283	1.00[CEU][hapmap]
rs10821289	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993003	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993009	0.92[EUR][1000 genomes]
rs10993028	0.94[EUR][1000 genomes]
rs10993030	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993032	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993035	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993039	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993044	0.90[EUR][1000 genomes]
rs10993057	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11793324	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs11795301	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12338762	0.81[EUR][1000 genomes]
rs12340234	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1317246	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1933670	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1963282	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2211361	0.87[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.90[EUR][1000 genomes]
rs4743942	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57094654	0.92[EUR][1000 genomes]
rs7020044	0.87[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.90[EUR][1000 genomes]
rs7045483	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.81[MKK][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7859394	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7866395	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96723000-96728800	Weak transcription	Pancreas	Pancrea
2	chr9:96723000-96729800	Weak transcription	Gastric	stomach
3	chr9:96725400-96730800	Weak transcription	Stomach Mucosa	stomach
4	chr9:96726600-96730400	Strong transcription	Fetal Stomach	stomach
5	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
6	chr9:96727200-96728400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96727400-96729200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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