Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114421	0.96[EUR][1000 genomes]
rs10114811	0.99[EUR][1000 genomes]
rs10116489	0.96[EUR][1000 genomes]
rs10116746	0.96[EUR][1000 genomes]
rs10122071	0.96[EUR][1000 genomes]
rs10761314	0.96[EUR][1000 genomes]
rs10821272	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821276	0.94[EUR][1000 genomes]
rs10821280	0.83[EUR][1000 genomes]
rs10821281	0.83[EUR][1000 genomes]
rs10821283	0.83[EUR][1000 genomes]
rs10821289	0.96[EUR][1000 genomes]
rs10993003	0.91[EUR][1000 genomes]
rs10993009	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993030	0.95[EUR][1000 genomes]
rs10993032	0.96[EUR][1000 genomes]
rs10993035	0.96[EUR][1000 genomes]
rs10993039	0.96[EUR][1000 genomes]
rs10993044	0.96[EUR][1000 genomes]
rs10993057	0.88[EUR][1000 genomes]
rs11793324	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11795301	0.99[EUR][1000 genomes]
rs12340234	0.96[EUR][1000 genomes]
rs12353106	0.83[EUR][1000 genomes]
rs1317246	0.85[EUR][1000 genomes]
rs1592152	0.83[EUR][1000 genomes]
rs1854836	0.83[EUR][1000 genomes]
rs1933670	0.95[EUR][1000 genomes]
rs1963282	0.99[EUR][1000 genomes]
rs2094929	0.83[EUR][1000 genomes]
rs2211361	0.96[EUR][1000 genomes]
rs2225937	0.83[EUR][1000 genomes]
rs4743942	0.96[EUR][1000 genomes]
rs57094654	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7020044	0.96[EUR][1000 genomes]
rs7045483	0.96[EUR][1000 genomes]
rs7859394	0.85[EUR][1000 genomes]
rs7866395	0.99[EUR][1000 genomes]
rs7868385	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3426132	chr9:96782446-96794518	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96780800-96788400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:96782200-96788600	Weak transcription	Esophagus	oesophagus

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