Variant report

Variant	rs1317246
Chromosome Location	chr9:96707563-96707564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96705528..96708010-chr9:96711810..96713358,2	K562	blood:
2	chr9:96702755..96704625-chr9:96706063..96708552,2	K562	blood:
3	chr9:96706258..96707958-chr9:96711820..96714339,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10114421	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10114811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116489	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10116746	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs10122071	0.82[EUR][1000 genomes]
rs10761314	1.00[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs10821272	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10821276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821281	1.00[CEU][hapmap]
rs10821283	1.00[CEU][hapmap]
rs10821289	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs10993003	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993009	0.84[EUR][1000 genomes]
rs10993028	0.85[EUR][1000 genomes]
rs10993030	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993032	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993035	0.84[EUR][1000 genomes]
rs10993039	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs10993044	0.82[EUR][1000 genomes]
rs10993057	1.00[CEU][hapmap]
rs11793324	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11795301	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12340234	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs1933670	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1963282	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2211361	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs4743942	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57094654	0.84[EUR][1000 genomes]
rs7020044	0.87[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7045483	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs7859394	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7866395	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96704800-96708000	Bivalent Enhancer	Fetal Stomach	stomach
2	chr9:96706000-96707600	Weak transcription	Right Atrium	heart
3	chr9:96706800-96708600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:96707000-96708000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr9:96707200-96707600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96707200-96707800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:96707200-96708000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:96707200-96708600	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr9:96707400-96708600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr9:96707400-96708800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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