Variant report

Variant	rs10821272
Chromosome Location	chr9:96709839-96709840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96709646..96715968-chr9:96715980..96721050,10	MCF-7	breast:
2	chr9:96705963..96707541-chr9:96709329..96711419,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131668	Chromatin interaction
ENSG00000235601	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10114421	0.90[EUR][1000 genomes]
rs10114811	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10116489	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10116746	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10122071	0.87[EUR][1000 genomes]
rs10761314	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10821276	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs10821281	1.00[CEU][hapmap]
rs10821283	1.00[CEU][hapmap]
rs10821289	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10993003	1.00[EUR][1000 genomes]
rs10993009	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993028	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993030	0.89[EUR][1000 genomes]
rs10993032	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10993035	0.90[EUR][1000 genomes]
rs10993039	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10993044	0.87[EUR][1000 genomes]
rs10993057	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11793324	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795301	0.90[EUR][1000 genomes]
rs12340234	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1317246	0.94[EUR][1000 genomes]
rs1933670	0.96[EUR][1000 genomes]
rs1963282	0.92[EUR][1000 genomes]
rs2211361	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs4743942	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs57094654	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58496597	0.94[ASN][1000 genomes]
rs7020044	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7045483	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7859394	0.93[EUR][1000 genomes]
rs7866395	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96708600-96710600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:96708600-96713000	Weak transcription	Gastric	stomach
3	chr9:96708800-96710000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr9:96708800-96710400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr9:96708800-96710400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr9:96709000-96713200	Weak transcription	Right Atrium	heart
7	chr9:96709200-96710800	Weak transcription	Pancreas	Pancrea
8	chr9:96709400-96710000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:96709600-96710000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:96709800-96710000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:96709800-96710200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr9:96709800-96710200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
13	chr9:96709800-96710400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr9:96709800-96710400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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