Variant report

Variant	rs10114421
Chromosome Location	chr9:96793603-96793604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96791676..96794493-chr9:96936767..96941836,4	MCF-7	breast:
2	chr9:96791956..96794354-chr9:96926207..96931491,6	MCF-7	breast:
3	chr9:96792323..96794528-chr9:96927672..96930924,4	MCF-7	breast:
4	chr9:96792104..96794426-chr9:96846620..96848608,2	MCF-7	breast:
5	chr9:96790378..96795979-chr9:96796527..96801819,13	MCF-7	breast:
6	chr9:96790823..96795467-chr9:96925835..96932235,7	K562	blood:
7	chr9:96793114..96795953-chr9:96849084..96851331,2	K562	blood:
8	chr9:96791020..96793870-chr9:96797908..96800825,2	K562	blood:
9	chr9:96790341..96794271-chr9:96926817..96931236,5	K562	blood:
10	chr9:96791853..96794356-chr9:96860367..96862558,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158079	Chromatin interaction
ENSG00000199165	Chromatin interaction
ENSG00000199072	Chromatin interaction
ENSG00000199133	Chromatin interaction
ENSG00000269929	Chromatin interaction
ENSG00000227666	Chromatin interaction
ENSG00000269946	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114811	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10116489	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116746	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122071	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761314	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821272	0.90[EUR][1000 genomes]
rs10821276	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821280	0.80[EUR][1000 genomes]
rs10821281	0.80[EUR][1000 genomes]
rs10821283	0.80[EUR][1000 genomes]
rs10821289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993003	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993009	0.95[EUR][1000 genomes]
rs10993028	0.96[EUR][1000 genomes]
rs10993030	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993032	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993035	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993039	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993044	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993057	0.89[EUR][1000 genomes]
rs11793324	0.90[EUR][1000 genomes]
rs11795301	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12340234	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12353106	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1317246	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1592152	0.80[EUR][1000 genomes]
rs1854836	0.80[EUR][1000 genomes]
rs1933670	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1963282	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094929	0.80[EUR][1000 genomes]
rs2211361	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2225937	0.80[EUR][1000 genomes]
rs4743942	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57094654	0.95[EUR][1000 genomes]
rs7020044	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7045483	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859394	0.83[EUR][1000 genomes]
rs7866395	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7868385	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv3426132	chr9:96782446-96794518	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96791800-96793800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr9:96791800-96794000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr9:96791800-96794200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:96792000-96793800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr9:96792000-96793800	Active TSS	Placenta Amnion	Placenta Amnion
6	chr9:96792000-96794200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:96792200-96793800	Active TSS	H9 Cell Line	embryonic stem cell
8	chr9:96792200-96793800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:96792200-96793800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:96792200-96793800	Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:96792200-96793800	Active TSS	Brain Anterior Caudate	brain
12	chr9:96792200-96793800	Active TSS	Brain Hippocampus Middle	brain
13	chr9:96792200-96793800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr9:96792200-96793800	Active TSS	Rectal Smooth Muscle	rectum
15	chr9:96792200-96793800	Active TSS	A549	lung
16	chr9:96792200-96794000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:96792200-96794000	Active TSS	Colonic Mucosa	Colon
18	chr9:96792200-96794000	Active TSS	Fetal Intestine Small	intestine
19	chr9:96792200-96794000	Active TSS	HSMM	muscle
20	chr9:96792200-96794200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:96792200-96794200	Active TSS	Fetal Brain Female	brain
22	chr9:96792200-96794200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr9:96792200-96794400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:96792200-96794400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr9:96792200-96794400	Active TSS	Right Ventricle	heart
26	chr9:96792200-96794600	Active TSS	HSMMtube	muscle
27	chr9:96792400-96793800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:96792400-96793800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:96792400-96793800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:96792400-96793800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:96792400-96793800	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr9:96792400-96793800	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr9:96792400-96793800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:96792400-96793800	Active TSS	Colon Smooth Muscle	Colon
35	chr9:96792400-96793800	Active TSS	Fetal Heart	heart
36	chr9:96792400-96793800	Active TSS	Lung	lung
37	chr9:96792400-96793800	Active TSS	Stomach Mucosa	stomach
38	chr9:96792400-96794000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:96792400-96794000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:96792400-96794000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:96792400-96794000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:96792400-96794000	Active TSS	Brain Angular Gyrus	brain
43	chr9:96792400-96794200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr9:96792400-96794200	Active TSS	Aorta	Aorta
45	chr9:96792400-96794200	Active TSS	Ovary	ovary
46	chr9:96792400-96794200	Active TSS	NHLF	lung
47	chr9:96792400-96794400	Active TSS	Left Ventricle	heart
48	chr9:96792400-96794400	Active TSS	Psoas Muscle	Psoas
49	chr9:96792400-96794600	Active TSS	Right Atrium	heart
50	chr9:96792600-96793800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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