Variant report

Variant	rs7035725
Chromosome Location	chr9:110049914-110049915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110049581..110051989-chr9:110070046..110072937,2	MCF-7	breast:
2	chr9:110049612..110053509-chr9:110059334..110062914,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10521083	0.86[ASN][1000 genomes]
rs10732368	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739234	0.92[ASN][1000 genomes]
rs10739237	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10739238	0.85[ASN][1000 genomes]
rs10759222	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10759223	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10759225	0.83[ASN][1000 genomes]
rs10759226	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10759227	0.82[ASN][1000 genomes]
rs10816483	0.85[ASN][1000 genomes]
rs10816486	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10816487	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10816492	0.83[ASN][1000 genomes]
rs10816493	0.86[ASN][1000 genomes]
rs10978798	0.85[ASN][1000 genomes]
rs1323808	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1323809	0.83[ASN][1000 genomes]
rs1535765	0.86[ASN][1000 genomes]
rs1805332	0.86[ASN][1000 genomes]
rs1805334	0.86[ASN][1000 genomes]
rs1805335	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1886134	0.86[ASN][1000 genomes]
rs1969798	0.87[ASN][1000 genomes]
rs1980725	0.86[ASN][1000 genomes]
rs2147071	0.86[ASN][1000 genomes]
rs2147072	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2417783	0.81[ASN][1000 genomes]
rs2417785	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818367	0.86[ASN][1000 genomes]
rs4278207	0.86[ASN][1000 genomes]
rs4625087	0.84[ASN][1000 genomes]
rs4978404	0.86[ASN][1000 genomes]
rs4978406	0.86[ASN][1000 genomes]
rs4978844	0.86[ASN][1000 genomes]
rs4978849	0.86[ASN][1000 genomes]
rs7019341	0.84[ASN][1000 genomes]
rs7025563	0.84[ASN][1000 genomes]
rs7029997	0.86[ASN][1000 genomes]
rs7030169	0.86[ASN][1000 genomes]
rs7030555	0.86[ASN][1000 genomes]
rs7030631	0.86[ASN][1000 genomes]
rs7031906	0.84[ASN][1000 genomes]
rs7035611	0.92[ASN][1000 genomes]
rs7038737	0.86[ASN][1000 genomes]
rs7039041	0.86[ASN][1000 genomes]
rs7041497	0.86[ASN][1000 genomes]
rs7043962	0.86[ASN][1000 genomes]
rs7046950	0.86[ASN][1000 genomes]
rs7856112	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7856227	0.86[ASN][1000 genomes]
rs7859769	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs942292	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs942293	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110045000-110050600	Active TSS	NHLF	lung
2	chr9:110046800-110050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:110046800-110050800	Weak transcription	Gastric	stomach
4	chr9:110046800-110050800	Weak transcription	Pancreas	Pancrea
5	chr9:110046800-110051000	Weak transcription	Spleen	Spleen
6	chr9:110047200-110050600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:110047200-110050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:110047200-110052400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:110047200-110052600	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:110047200-110054600	Weak transcription	Lung	lung
11	chr9:110047600-110067200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:110047800-110051800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:110047800-110054200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:110048000-110050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:110048000-110051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:110048000-110051200	Enhancers	Thymus	Thymus
17	chr9:110048000-110053200	Weak transcription	Fetal Thymus	thymus
18	chr9:110048000-110056000	Weak transcription	Aorta	Aorta
19	chr9:110048000-110058400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:110048200-110050200	Enhancers	Fetal Heart	heart
21	chr9:110048400-110051200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:110048400-110051400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:110048400-110051800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr9:110048400-110052800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr9:110048400-110058000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr9:110048600-110050000	Enhancers	Colon Smooth Muscle	Colon
27	chr9:110048600-110050000	Enhancers	Left Ventricle	heart
28	chr9:110048600-110050400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:110048600-110050400	Weak transcription	Small Intestine	intestine
30	chr9:110048600-110050600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:110048600-110050800	Weak transcription	Ovary	ovary
32	chr9:110048600-110050800	Weak transcription	Right Atrium	heart
33	chr9:110048600-110051400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:110048600-110051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:110048600-110052000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:110048600-110052000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr9:110048600-110052000	Active TSS	GM12878-XiMat	blood
38	chr9:110048600-110052200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr9:110048600-110058000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr9:110048800-110050000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:110048800-110050200	Weak transcription	HUVEC	blood vessel
42	chr9:110048800-110050400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:110048800-110051400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr9:110048800-110051400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:110048800-110051800	Weak transcription	Brain Substantia Nigra	brain
46	chr9:110048800-110051800	Weak transcription	Fetal Lung	lung
47	chr9:110048800-110052000	Weak transcription	Brain Hippocampus Middle	brain
48	chr9:110048800-110052000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr9:110048800-110052200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:110048800-110052600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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