Variant report

Variant	rs703633
Chromosome Location	chr12:104052338-104052339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1650123	0.91[ASN][1000 genomes]
rs1650124	0.90[ASN][1000 genomes]
rs703623	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs703624	0.91[ASN][1000 genomes]
rs703625	0.91[ASN][1000 genomes]
rs703627	0.91[ASN][1000 genomes]
rs703632	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958947	0.89[ASN][1000 genomes]
rs831427	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104051000-104052400	Enhancers	Primary T cells from cord blood	blood
4	chr12:104051200-104052600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:104051200-104053200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr12:104051400-104052600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:104052000-104052600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:104052200-104059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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