Variant report

Variant	rs7039092
Chromosome Location	chr9:15152897-15152898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34512082	1.00[AMR][1000 genomes]
rs57954003	1.00[AMR][1000 genomes]
rs58177069	1.00[AMR][1000 genomes]
rs59461104	1.00[AMR][1000 genomes]
rs7042519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73642489	1.00[AMR][1000 genomes]
rs73642494	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15137200-15156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:15141000-15154400	Weak transcription	Fetal Stomach	stomach
3	chr9:15146800-15160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:15147200-15156400	Weak transcription	Fetal Brain Male	brain
5	chr9:15148000-15155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:15151000-15156400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:15151400-15155400	Weak transcription	Osteobl	bone
8	chr9:15151800-15154800	Weak transcription	HUVEC	blood vessel
9	chr9:15152600-15153600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:15152600-15153600	Weak transcription	Aorta	Aorta
11	chr9:15152600-15153600	Weak transcription	Right Atrium	heart
12	chr9:15152600-15157600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:15152800-15153000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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