Variant report

Variant	rs7040029
Chromosome Location	chr9:117619214-117619215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1467563	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4263839	0.81[MEX][hapmap]
rs6478108	0.85[MEX][hapmap]
rs6478109	0.85[MEX][hapmap]
rs722126	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7848647	0.85[MEX][hapmap];0.83[TSI][hapmap]
rs7866342	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs911605	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117613400-117622600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:117617400-117619400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:117617400-117619400	Enhancers	Adipose Nuclei	Adipose
4	chr9:117617400-117620000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:117617800-117619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:117617800-117620000	Enhancers	NHLF	lung
7	chr9:117618200-117619400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:117618600-117619800	Enhancers	HSMMtube	muscle
9	chr9:117618800-117619400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:117618800-117619600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:117619200-117619600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:117619200-117619800	Enhancers	HSMM	muscle
13	chr9:117619200-117620000	Enhancers	NHDF-Ad	bronchial
14	chr9:117619200-117620000	Enhancers	Osteobl	bone
15	chr9:117619200-117623600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:117619200-117626800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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