Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:117558199-117559088	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117551978..117554361-chr9:117558234..117561272,3	K562	blood:

Variant related genes	Relation type
TNFSF15	TF binding region

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10817678	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3810936	0.88[ASW][hapmap];0.81[MEX][hapmap]
rs4246905	0.84[MEX][hapmap]
rs4263839	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4366152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4372078	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6478109	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7848647	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Leprosy	20018961	GWAS catalog

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:117542800-117560200	Weak transcription	A549	lung
4	chr9:117545400-117561400	Weak transcription	Gastric	stomach
5	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
8	chr9:117548800-117560200	Weak transcription	Fetal Stomach	stomach
9	chr9:117549400-117560800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:117551600-117560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:117551600-117560800	Weak transcription	HMEC	breast
12	chr9:117552800-117561200	Weak transcription	Placenta	Placenta
13	chr9:117553000-117561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:117553000-117561800	Weak transcription	Lung	lung
15	chr9:117553400-117565200	Weak transcription	HUVEC	blood vessel
16	chr9:117554600-117560800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:117554800-117560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:117555000-117560800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:117555800-117559600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:117555800-117560400	Weak transcription	Fetal Intestine Large	intestine

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