Variant report

Variant	rs4366152
Chromosome Location	chr9:117564875-117564876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117564357..117566825-chr9:117567228..117568733,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181634	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10114470	0.92[AFR][1000 genomes]
rs10817678	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3810936	0.92[AFR][1000 genomes]
rs4263839	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4372078	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6478108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6478109	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848647	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Leprosy	25642632	GWAS catalog

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:117553400-117565200	Weak transcription	HUVEC	blood vessel
3	chr9:117561800-117565000	Genic enhancers	Fetal Intestine Small	intestine
4	chr9:117562000-117565800	Weak transcription	Colonic Mucosa	Colon
5	chr9:117562000-117566200	Weak transcription	NHEK	skin
6	chr9:117562000-117566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:117562000-117568000	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:117562200-117565000	Weak transcription	Fetal Kidney	kidney
9	chr9:117562200-117565200	Weak transcription	Gastric	stomach
10	chr9:117562200-117565600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:117562200-117565800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:117562200-117565800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:117562200-117565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:117562200-117565800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:117562200-117565800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:117562200-117565800	Weak transcription	Adipose Nuclei	Adipose
17	chr9:117562200-117565800	Weak transcription	Lung	lung
18	chr9:117562200-117565800	Weak transcription	Pancreas	Pancrea
19	chr9:117562200-117565800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr9:117562200-117565800	Weak transcription	Spleen	Spleen
21	chr9:117562200-117565800	Weak transcription	HSMM	muscle
22	chr9:117562200-117566000	Weak transcription	Small Intestine	intestine
23	chr9:117562200-117566200	Weak transcription	Esophagus	oesophagus
24	chr9:117562200-117566200	Weak transcription	Hela-S3	cervix
25	chr9:117562200-117566600	Weak transcription	HSMMtube	muscle
26	chr9:117562200-117568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:117562400-117565000	Weak transcription	Fetal Lung	lung
28	chr9:117562400-117565200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:117562400-117565200	Weak transcription	Fetal Stomach	stomach
30	chr9:117562400-117565400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr9:117562400-117565600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:117562400-117565600	Weak transcription	Stomach Mucosa	stomach
33	chr9:117562400-117565800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:117562400-117566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr9:117562400-117567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr9:117562400-117568000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr9:117562600-117565000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:117562600-117565200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr9:117562800-117565000	Weak transcription	Fetal Intestine Large	intestine
40	chr9:117563400-117565400	Weak transcription	A549	lung
41	chr9:117563600-117565200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:117563600-117566200	Weak transcription	HMEC	breast
43	chr9:117563600-117566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:117563800-117565800	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:117564000-117565200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:117564400-117565200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:117564800-117568000	Enhancers	Placenta	Placenta

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