Variant report

Variant	rs3810936
Chromosome Location	chr9:117552885-117552886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117551978..117554361-chr9:117558234..117561272,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10114470	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246905	0.83[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs4263839	0.88[ASW][hapmap];0.93[LWK][hapmap];0.92[AFR][1000 genomes]
rs4366152	0.92[AFR][1000 genomes]
rs6478108	0.88[ASW][hapmap];0.81[MEX][hapmap]
rs6478109	0.88[ASW][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];0.92[AFR][1000 genomes]
rs7848647	0.88[ASW][hapmap];0.93[LWK][hapmap];0.81[MEX][hapmap];0.92[AFR][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Crohn's disease	21102463	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3810936	SVEP1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:117542800-117560200	Weak transcription	A549	lung
4	chr9:117545400-117561400	Weak transcription	Gastric	stomach
5	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:117548000-117557000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
9	chr9:117548800-117560200	Weak transcription	Fetal Stomach	stomach
10	chr9:117549400-117560800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:117550400-117553200	Strong transcription	Fetal Intestine Small	intestine
12	chr9:117551200-117555000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:117551200-117555800	Strong transcription	Fetal Intestine Large	intestine
14	chr9:117551600-117554200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:117551600-117560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:117551600-117560800	Weak transcription	HMEC	breast
17	chr9:117552200-117555200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:117552400-117553400	Strong transcription	HUVEC	blood vessel
19	chr9:117552600-117553000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:117552600-117554600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr9:117552800-117553000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:117552800-117553000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr9:117552800-117553000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:117552800-117553000	ZNF genes & repeats	Lung	lung
25	chr9:117552800-117553200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:117552800-117553400	Enhancers	HSMMtube	muscle
27	chr9:117552800-117553800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:117552800-117555800	Strong transcription	Primary B cells from cord blood	blood
29	chr9:117552800-117561200	Weak transcription	Placenta	Placenta

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