Variant report

Variant	rs4372078
Chromosome Location	chr9:117563687-117563688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117560512..117564321-chr9:117564401..117568664,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181634	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1322055	1.00[YRI][hapmap]
rs4246905	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4263839	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4366152	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6478108	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6478109	0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs722126	0.85[AMR][1000 genomes]
rs7848647	0.81[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs7869487	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:117553400-117565200	Weak transcription	HUVEC	blood vessel
3	chr9:117559600-117564400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:117561800-117565000	Genic enhancers	Fetal Intestine Small	intestine
5	chr9:117562000-117565800	Weak transcription	Colonic Mucosa	Colon
6	chr9:117562000-117566200	Weak transcription	NHEK	skin
7	chr9:117562000-117566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:117562000-117568000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:117562200-117565000	Weak transcription	Fetal Kidney	kidney
10	chr9:117562200-117565200	Weak transcription	Gastric	stomach
11	chr9:117562200-117565600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:117562200-117565800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:117562200-117565800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:117562200-117565800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:117562200-117565800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:117562200-117565800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:117562200-117565800	Weak transcription	Adipose Nuclei	Adipose
18	chr9:117562200-117565800	Weak transcription	Lung	lung
19	chr9:117562200-117565800	Weak transcription	Pancreas	Pancrea
20	chr9:117562200-117565800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:117562200-117565800	Weak transcription	Spleen	Spleen
22	chr9:117562200-117565800	Weak transcription	HSMM	muscle
23	chr9:117562200-117566000	Weak transcription	Small Intestine	intestine
24	chr9:117562200-117566200	Weak transcription	Esophagus	oesophagus
25	chr9:117562200-117566200	Weak transcription	Hela-S3	cervix
26	chr9:117562200-117566600	Weak transcription	HSMMtube	muscle
27	chr9:117562200-117568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:117562400-117565000	Weak transcription	Fetal Lung	lung
29	chr9:117562400-117565200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:117562400-117565200	Weak transcription	Fetal Stomach	stomach
31	chr9:117562400-117565400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr9:117562400-117565600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr9:117562400-117565600	Weak transcription	Stomach Mucosa	stomach
34	chr9:117562400-117565800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:117562400-117566200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:117562400-117567600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:117562400-117568000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr9:117562600-117565000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:117562600-117565200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:117562800-117564800	Weak transcription	Placenta	Placenta
41	chr9:117562800-117565000	Weak transcription	Fetal Intestine Large	intestine
42	chr9:117563200-117563800	Enhancers	Fetal Muscle Leg	muscle
43	chr9:117563400-117565400	Weak transcription	A549	lung
44	chr9:117563600-117565200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:117563600-117566200	Weak transcription	HMEC	breast
46	chr9:117563600-117566400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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