Variant report

Variant	rs7040600
Chromosome Location	chr9:13955955-13955956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11787983	0.89[ASN][1000 genomes]
rs12000837	1.00[CHB][hapmap]
rs12343984	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
2	chr9:13939800-13956200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:13940400-13962000	Weak transcription	Left Ventricle	heart
4	chr9:13953400-13956400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:13955000-13956400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:13955000-13956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:13955000-13957000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:13955000-13957600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:13955200-13956200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:13955200-13956400	Weak transcription	Brain Germinal Matrix	brain
11	chr9:13955200-13956600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:13955200-13957200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:13955600-13956800	Enhancers	HSMM	muscle
14	chr9:13955800-13956200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:13955800-13956600	Enhancers	Colon Smooth Muscle	Colon
16	chr9:13955800-13957400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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