Variant report

Variant	rs12343984
Chromosome Location	chr9:13957914-13957915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10116057	0.81[EUR][1000 genomes]
rs10121122	0.80[EUR][1000 genomes]
rs10123937	0.80[EUR][1000 genomes]
rs11787983	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277411	0.81[EUR][1000 genomes]
rs2382426	0.81[EUR][1000 genomes]
rs2382429	0.81[EUR][1000 genomes]
rs28675048	0.84[EUR][1000 genomes]
rs55964819	0.85[EUR][1000 genomes]
rs56001972	0.85[EUR][1000 genomes]
rs56021345	0.85[EUR][1000 genomes]
rs56045419	0.84[EUR][1000 genomes]
rs56241626	0.85[EUR][1000 genomes]
rs56333536	0.85[EUR][1000 genomes]
rs56390403	0.85[EUR][1000 genomes]
rs7040600	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3423193	chr9:13956977-13959525	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
8	esv3439330	chr9:13957152-13959450	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
9	esv3420599	chr9:13957602-13959100	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
2	chr9:13940400-13962000	Weak transcription	Left Ventricle	heart
3	chr9:13956600-13962200	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:13957400-13958600	Weak transcription	Fetal Lung	lung
5	chr9:13957400-13958800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:13957400-13960000	Weak transcription	Adipose Nuclei	Adipose
7	chr9:13957400-13960000	Weak transcription	Fetal Heart	heart
8	chr9:13957600-13958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:13957800-13958000	Enhancers	Aorta	Aorta
10	chr9:13957800-13958800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr9:13957800-13961400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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