Variant report
Variant | rs2382429 |
---|---|
Chromosome Location | chr9:13931696-13931697 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10113975 | 1.00[ASN][1000 genomes] |
rs10114117 | 1.00[ASN][1000 genomes] |
rs10116057 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10118307 | 1.00[ASN][1000 genomes] |
rs10120298 | 1.00[ASN][1000 genomes] |
rs10120471 | 1.00[ASN][1000 genomes] |
rs10120716 | 1.00[ASN][1000 genomes] |
rs10120720 | 1.00[ASN][1000 genomes] |
rs10121526 | 1.00[ASN][1000 genomes] |
rs10121771 | 1.00[ASN][1000 genomes] |
rs10123356 | 1.00[ASN][1000 genomes] |
rs10124185 | 1.00[ASN][1000 genomes] |
rs10961293 | 1.00[ASN][1000 genomes] |
rs10961299 | 1.00[ASN][1000 genomes] |
rs10961302 | 1.00[ASN][1000 genomes] |
rs11787983 | 0.80[EUR][1000 genomes] |
rs12171725 | 1.00[ASN][1000 genomes] |
rs12335400 | 1.00[ASN][1000 genomes] |
rs12339494 | 1.00[ASN][1000 genomes] |
rs12341163 | 1.00[ASN][1000 genomes] |
rs12341611 | 1.00[ASN][1000 genomes] |
rs12342217 | 1.00[ASN][1000 genomes] |
rs12343984 | 0.81[EUR][1000 genomes] |
rs12349396 | 1.00[ASN][1000 genomes] |
rs12352669 | 1.00[ASN][1000 genomes] |
rs17191861 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[ASN][1000 genomes] |
rs17192270 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17224436 | 1.00[ASN][1000 genomes] |
rs17224925 | 1.00[ASN][1000 genomes] |
rs17277062 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17277138 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17277411 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1923350 | 1.00[ASN][1000 genomes] |
rs1923351 | 1.00[ASN][1000 genomes] |
rs2382424 | 1.00[ASN][1000 genomes] |
rs28400408 | 1.00[ASN][1000 genomes] |
rs28564078 | 1.00[ASN][1000 genomes] |
rs28565455 | 1.00[ASN][1000 genomes] |
rs28675048 | 0.88[EUR][1000 genomes] |
rs28679328 | 1.00[ASN][1000 genomes] |
rs28890298 | 1.00[ASN][1000 genomes] |
rs2890975 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55964819 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56001972 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56021345 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56045419 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56241626 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56333536 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56390403 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62533692 | 1.00[ASN][1000 genomes] |
rs62533694 | 1.00[ASN][1000 genomes] |
rs62533704 | 1.00[ASN][1000 genomes] |
rs7032721 | 1.00[ASN][1000 genomes] |
rs7032794 | 1.00[ASN][1000 genomes] |
rs7033235 | 1.00[ASN][1000 genomes] |
rs7048311 | 1.00[ASN][1000 genomes] |
rs7861483 | 1.00[ASN][1000 genomes] |
rs7874947 | 1.00[ASN][1000 genomes] |
rs957690 | 0.85[EUR][1000 genomes] |
rs9696661 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
3 | nsv613635 | chr9:13893246-13961462 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:13916000-13932800 | Weak transcription | Psoas Muscle | Psoas |
2 | chr9:13924200-13938000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr9:13924800-13932400 | Weak transcription | Fetal Muscle Leg | muscle |
4 | chr9:13929200-13932400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
5 | chr9:13931600-13933000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
6 | chr9:13931600-13935800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |