Variant report

Variant	rs56333536
Chromosome Location	chr9:13956440-13956441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10113975	1.00[ASN][1000 genomes]
rs10114117	1.00[ASN][1000 genomes]
rs10116057	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10118307	1.00[ASN][1000 genomes]
rs10120298	1.00[ASN][1000 genomes]
rs10120471	1.00[ASN][1000 genomes]
rs10120716	1.00[ASN][1000 genomes]
rs10120720	1.00[ASN][1000 genomes]
rs10121526	1.00[ASN][1000 genomes]
rs10121771	1.00[ASN][1000 genomes]
rs10123356	1.00[ASN][1000 genomes]
rs10124185	1.00[ASN][1000 genomes]
rs10961293	1.00[ASN][1000 genomes]
rs10961299	1.00[ASN][1000 genomes]
rs10961302	1.00[ASN][1000 genomes]
rs11787983	0.84[EUR][1000 genomes]
rs12171725	1.00[ASN][1000 genomes]
rs12335400	1.00[ASN][1000 genomes]
rs12339494	1.00[ASN][1000 genomes]
rs12341163	1.00[ASN][1000 genomes]
rs12341611	1.00[ASN][1000 genomes]
rs12342217	1.00[ASN][1000 genomes]
rs12343984	0.85[EUR][1000 genomes]
rs12349396	1.00[ASN][1000 genomes]
rs12352669	1.00[ASN][1000 genomes]
rs17191861	1.00[ASN][1000 genomes]
rs17192270	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17224436	1.00[ASN][1000 genomes]
rs17224925	1.00[ASN][1000 genomes]
rs17277062	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277138	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277411	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923350	1.00[ASN][1000 genomes]
rs1923351	1.00[ASN][1000 genomes]
rs2382424	1.00[ASN][1000 genomes]
rs2382429	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28400408	1.00[ASN][1000 genomes]
rs28564078	1.00[ASN][1000 genomes]
rs28565455	1.00[ASN][1000 genomes]
rs28675048	0.84[EUR][1000 genomes]
rs28679328	1.00[ASN][1000 genomes]
rs28890298	1.00[ASN][1000 genomes]
rs2890975	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55964819	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56001972	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021345	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56045419	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56241626	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56390403	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62533692	1.00[ASN][1000 genomes]
rs62533694	1.00[ASN][1000 genomes]
rs62533704	1.00[ASN][1000 genomes]
rs7032721	1.00[ASN][1000 genomes]
rs7032794	1.00[ASN][1000 genomes]
rs7033235	1.00[ASN][1000 genomes]
rs7048311	1.00[ASN][1000 genomes]
rs7861483	1.00[ASN][1000 genomes]
rs7874947	1.00[ASN][1000 genomes]
rs9696661	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
2	chr9:13940400-13962000	Weak transcription	Left Ventricle	heart
3	chr9:13955000-13956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:13955000-13957000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:13955000-13957600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:13955200-13956600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:13955200-13957200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:13955600-13956800	Enhancers	HSMM	muscle
9	chr9:13955800-13956600	Enhancers	Colon Smooth Muscle	Colon
10	chr9:13955800-13957400	Enhancers	Fetal Lung	lung
11	chr9:13956200-13956600	Enhancers	Rectal Smooth Muscle	rectum
12	chr9:13956200-13956800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:13956200-13957200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:13956200-13957600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:13956400-13956600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr9:13956400-13956600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:13956400-13956800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:13956400-13957000	Enhancers	GM12878-XiMat	blood
19	chr9:13956400-13957200	Enhancers	Brain Germinal Matrix	brain
20	chr9:13956400-13957400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:13956400-13957600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:13956400-13957800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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