Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10116057	0.88[EUR][1000 genomes]
rs10117560	0.81[AFR][1000 genomes]
rs10119201	0.81[AFR][1000 genomes]
rs10121122	0.88[AMR][1000 genomes]
rs10122002	0.81[AFR][1000 genomes]
rs10123937	0.84[AMR][1000 genomes]
rs11787983	0.83[EUR][1000 genomes]
rs12343984	0.84[EUR][1000 genomes]
rs12347210	0.85[ASN][1000 genomes]
rs17192270	0.90[EUR][1000 genomes]
rs17277062	0.87[EUR][1000 genomes]
rs17277138	0.87[EUR][1000 genomes]
rs17277411	0.86[EUR][1000 genomes]
rs2382426	0.85[AMR][1000 genomes]
rs2382429	0.88[EUR][1000 genomes]
rs2890975	0.87[EUR][1000 genomes]
rs55964819	0.84[EUR][1000 genomes]
rs56001972	0.84[EUR][1000 genomes]
rs56021345	0.84[EUR][1000 genomes]
rs56045419	0.83[EUR][1000 genomes]
rs56241626	0.84[EUR][1000 genomes]
rs56333536	0.84[EUR][1000 genomes]
rs56390403	0.84[EUR][1000 genomes]
rs7031787	0.95[ASN][1000 genomes]
rs957690	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13933000-13937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:13933000-13937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13933200-13937000	Weak transcription	Fetal Lung	lung
5	chr9:13933400-13938800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:13933600-13938200	Weak transcription	Fetal Heart	heart
7	chr9:13933600-13938800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:13933600-13939000	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:13933600-13939600	Weak transcription	Adipose Nuclei	Adipose
10	chr9:13933600-13939600	Weak transcription	Left Ventricle	heart
11	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
12	chr9:13934800-13938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:13935800-13936200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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