Variant report

Variant	rs7874947
Chromosome Location	chr9:13899539-13899540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10113975	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10114117	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10116057	1.00[ASN][1000 genomes]
rs10118307	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120298	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120471	1.00[ASN][1000 genomes]
rs10120716	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121771	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10123356	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124185	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10961293	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961299	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961302	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12171725	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335400	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339494	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341163	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341611	1.00[ASN][1000 genomes]
rs12342217	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12349345	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12349396	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352669	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17191861	1.00[CHB][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17192270	1.00[ASN][1000 genomes]
rs17224436	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17224925	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17277062	1.00[ASN][1000 genomes]
rs17277138	1.00[ASN][1000 genomes]
rs17277411	1.00[ASN][1000 genomes]
rs1923350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923351	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2382424	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2382429	1.00[ASN][1000 genomes]
rs28400408	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564078	1.00[ASN][1000 genomes]
rs28565455	1.00[ASN][1000 genomes]
rs28679328	1.00[ASN][1000 genomes]
rs28890298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890975	1.00[ASN][1000 genomes]
rs55964819	1.00[ASN][1000 genomes]
rs56001972	1.00[ASN][1000 genomes]
rs56021345	1.00[ASN][1000 genomes]
rs56045419	1.00[ASN][1000 genomes]
rs56241626	1.00[ASN][1000 genomes]
rs56333536	1.00[ASN][1000 genomes]
rs56390403	1.00[ASN][1000 genomes]
rs62533692	1.00[ASN][1000 genomes]
rs62533694	1.00[ASN][1000 genomes]
rs62533704	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7032721	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7032794	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7033235	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7048311	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7861483	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9696661	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13880600-13899800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13897600-13900000	Enhancers	Fetal Heart	heart
3	chr9:13897800-13899800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:13897800-13899800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:13897800-13900000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:13897800-13900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:13897800-13900000	Weak transcription	Aorta	Aorta
8	chr9:13897800-13901600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:13898000-13900400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:13898400-13902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:13898600-13900600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:13898600-13900800	Enhancers	Fetal Muscle Leg	muscle
13	chr9:13898600-13900800	Enhancers	Fetal Stomach	stomach
14	chr9:13898600-13901400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:13898600-13901600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:13898800-13900800	Enhancers	Fetal Lung	lung
17	chr9:13898800-13901600	Enhancers	HMEC	breast
18	chr9:13898800-13901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:13898800-13901800	Enhancers	NHEK	skin
20	chr9:13899000-13899800	Weak transcription	Fetal Kidney	kidney
21	chr9:13899000-13900000	Weak transcription	Left Ventricle	heart
22	chr9:13899000-13901200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:13899000-13901400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:13899200-13900000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:13899200-13900000	Weak transcription	Placenta	Placenta
26	chr9:13899400-13899800	Weak transcription	HUVEC	blood vessel
27	chr9:13899400-13901400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:13899400-13901600	Enhancers	Adipose Nuclei	Adipose

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