Variant report

Variant	rs7041116
Chromosome Location	chr9:104348629-104348630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10120736	1.00[AMR][1000 genomes]
rs56363225	0.90[AFR][1000 genomes]
rs59616067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6479054	1.00[AMR][1000 genomes]
rs7037267	1.00[AMR][1000 genomes]
rs7044767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73659534	0.90[AFR][1000 genomes]
rs73659541	0.90[AFR][1000 genomes]
rs73659558	0.88[AFR][1000 genomes]
rs73659562	0.90[AFR][1000 genomes]
rs7852231	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104325200-104350000	Weak transcription	HSMMtube	muscle
2	chr9:104345400-104352000	Weak transcription	A549	lung
3	chr9:104346000-104349600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:104346400-104348800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:104347600-104349200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr9:104348200-104349000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:104348600-104349400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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