Variant report

Variant	rs10120736
Chromosome Location	chr9:104502931-104502932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10117050	0.94[AFR][1000 genomes]
rs10119079	0.94[AFR][1000 genomes]
rs10121691	1.00[AFR][1000 genomes]
rs10122077	0.94[AFR][1000 genomes]
rs10122813	0.84[AFR][1000 genomes]
rs10123334	0.94[AFR][1000 genomes]
rs10125809	0.82[AFR][1000 genomes]
rs10156603	0.94[AFR][1000 genomes]
rs10989575	0.82[AFR][1000 genomes]
rs10989593	0.94[AFR][1000 genomes]
rs10989679	1.00[AMR][1000 genomes]
rs11506966	0.82[AFR][1000 genomes]
rs12339901	0.80[AFR][1000 genomes]
rs12340167	0.82[AFR][1000 genomes]
rs12342952	0.94[AFR][1000 genomes]
rs12343188	0.82[AFR][1000 genomes]
rs12344042	0.82[AFR][1000 genomes]
rs12344841	0.82[AFR][1000 genomes]
rs12346815	0.82[AFR][1000 genomes]
rs12349306	1.00[AMR][1000 genomes]
rs28420755	0.82[AFR][1000 genomes]
rs28436645	0.94[AFR][1000 genomes]
rs28456110	1.00[AFR][1000 genomes]
rs28612816	0.82[AFR][1000 genomes]
rs28621686	0.82[AFR][1000 genomes]
rs28631285	1.00[AFR][1000 genomes]
rs28680751	0.94[AFR][1000 genomes]
rs28685096	0.82[AFR][1000 genomes]
rs28687945	0.82[AFR][1000 genomes]
rs28698513	0.82[AFR][1000 genomes]
rs28736781	0.94[AFR][1000 genomes]
rs58800610	1.00[AFR][1000 genomes]
rs59616067	1.00[AMR][1000 genomes]
rs6479054	1.00[AMR][1000 genomes]
rs7037267	1.00[AMR][1000 genomes]
rs7041116	1.00[AMR][1000 genomes]
rs7044767	1.00[AMR][1000 genomes]
rs73496772	0.82[AFR][1000 genomes]
rs73502933	0.82[AFR][1000 genomes]
rs73504933	1.00[AFR][1000 genomes]
rs73504976	1.00[AFR][1000 genomes]
rs73658427	0.82[AFR][1000 genomes]
rs73659113	1.00[AMR][1000 genomes]
rs73661552	1.00[AMR][1000 genomes]
rs73661553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046614	chr9:104492314-104686326	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1054992	chr9:104494816-104771134	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1043967	chr9:104498664-104636328	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104501600-104503400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:104502200-104503000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr9:104502200-104503000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr9:104502400-104503000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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