Variant report

Variant	rs12346815
Chromosome Location	chr9:104443565-104443566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104437852..104440174-chr9:104442279..104444495,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10114871	0.86[AFR][1000 genomes]
rs10117050	0.87[AFR][1000 genomes]
rs10119079	0.87[AFR][1000 genomes]
rs10119283	0.82[AFR][1000 genomes]
rs10120736	0.82[AFR][1000 genomes]
rs10121691	0.82[AFR][1000 genomes]
rs10122077	0.87[AFR][1000 genomes]
rs10123334	0.87[AFR][1000 genomes]
rs10125809	1.00[AFR][1000 genomes]
rs10156603	0.87[AFR][1000 genomes]
rs10989575	1.00[AFR][1000 genomes]
rs10989593	0.87[AFR][1000 genomes]
rs11506966	1.00[AFR][1000 genomes]
rs12339890	0.82[AFR][1000 genomes]
rs12340167	1.00[AFR][1000 genomes]
rs12342952	0.87[AFR][1000 genomes]
rs12343034	0.82[AFR][1000 genomes]
rs12343188	1.00[AFR][1000 genomes]
rs12344042	1.00[AFR][1000 genomes]
rs12344841	1.00[AFR][1000 genomes]
rs28420755	1.00[AFR][1000 genomes]
rs28436645	0.87[AFR][1000 genomes]
rs28456110	0.82[AFR][1000 genomes]
rs28504973	0.86[AFR][1000 genomes]
rs28612816	1.00[AFR][1000 genomes]
rs28621686	1.00[AFR][1000 genomes]
rs28631285	0.82[AFR][1000 genomes]
rs28680751	0.87[AFR][1000 genomes]
rs28687945	1.00[AFR][1000 genomes]
rs28736781	0.87[AFR][1000 genomes]
rs58800610	0.82[AFR][1000 genomes]
rs73496772	1.00[AFR][1000 genomes]
rs73502933	1.00[AFR][1000 genomes]
rs73504933	0.82[AFR][1000 genomes]
rs73504976	0.82[AFR][1000 genomes]
rs73658427	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv1003325	chr9:104441313-104447221	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3328970	chr9:104443281-104445124	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3518017	chr9:104443460-104444220	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3518019	chr9:104443460-104444220	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104441800-104445400	Weak transcription	Fetal Lung	lung
2	chr9:104443200-104446000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:104443400-104444800	Weak transcription	Fetal Brain Male	brain

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